Secundilactobacillus similis M36 | Type strain | DSM 23365, JCM 2765, LMG 23904, BCRC 80777, CIP 110209 (2024)

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Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16808]	Sample type/isolated from	fermented cane molasses at alcohol plants
[Ref.: #16808]	Country	Thailand
[Ref.: #16808]	Country ISO 3 Code	THA
[Ref.: #16808]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Fermented molasses

[Ref.: #122618]	Sample type/isolated from	Fermented cane molasses
[Ref.: #122618]	Country	Thailand
[Ref.: #122618]	Country ISO 3 Code	THA
[Ref.: #122618]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC071812 (>99% sequence identity) for Secundilactobacillus from Microbeatlas

Isolation sources categories

#Engineered	#Food production	#Sugary food
#Engineered	#Industrial	#Plant (Factory)

What are isolation sources categories?

Aquatic Samples	475
Soil Samples	256
Animal Samples	5495
Plant Samples	232
Total Samples	6458

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16808]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122618]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus similis gene for 16S ribosomal RNA, partial sequence, strain: JCM 2765	LC071812	1462	GenBank ENA	1423804 tax ID
[Ref.: #16808]	Lactobacillus similis gene for 16S rRNA, partial sequence	AB282889	1528	GenBank ENA	1423804 tax ID
[Ref.: #20218]	Lactobacillus similis gene for 16S rRNA, partial sequence, strain: JCM 2765	AB289056	682	GenBank ENA	1423804 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Secundilactobacillus similis DSM 23365 = JCM 2765	GCA_001436595	scaffold	GenBank ENA	1423804 tax ID
[Ref.: #67770]	Secundilactobacillus similis DSM 23365 = JCM 2765	GCA_001311075	contig	GenBank ENA	1423804 tax ID
[Ref.: #66792]	Lactobacillus similis DSM 23365 = JCM 2765	1423804.4	wgs	PATRIC	1423804 tax ID	*
[Ref.: #66792]	Lactobacillus similis DSM 23365 = JCM 2765	1423804.3	wgs	PATRIC	1423804 tax ID	*
[Ref.: #66792]	Secundilactobacillus similis JCM 2765	2728369669	draft	JGI IMG/M	1423804 tax ID	*
[Ref.: #66792]	Secundilactobacillus similis DSM 23365	2700989125	draft	JGI IMG/M	1423804 tax ID	*

[Ref.: #16808]	GC-content	48.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29360]	GC-content	48.5 mol%
[Ref.: #67770]	GC-content	47 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Schleiferilactobacillus similis DSM 23365 = JCM 2765 DSM 23365 NCBI: GCA_001436595.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus similis DSM 23365 = JCM 2765 PATRIC: 1423804.4
[Ref.: #69480]	motile	no	93.166	yes
[Ref.: #69480]	gram-positive	yes	97.631	yes
[Ref.: #69480]	anaerobic	no	90.799	no
[Ref.: #69480]	halophile	yes	76.546	no
[Ref.: #69480]	spore-forming	no	85.785	no
[Ref.: #69480]	glucose-util	yes	88.846	yes
[Ref.: #69480]	thermophile	no	99.654	no
[Ref.: #69480]	aerobic	no	93.392	no
[Ref.: #69480]	flagellated	no	95.084	yes
[Ref.: #69480]	glucose-ferment	yes	86.105	no

Availability in culture collections External links

[Ref.: #16808]

Culture collection no.

DSM 23365, JCM 2765, LMG 23904, BCRC 80777, CIP 110209

[Ref.: #76168]

SI-ID 63892

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus silagei sp. nov., isolated from orchardgrass silage.	Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.053124-0	2013	*
Phylogeny	Lactobacillus similis sp. nov., isolated from fermented cane molasses.	Kitahara M, Sakamoto M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.011551-0	2009	*
Phylogeny	Characterization of two novel pentose-fermenting and GABA-producing species: Levilactobacillus tujiorum sp. nov. and Secundilactobacillus angelensis sp. nov. Isolated from a solid-state fermented zha-chili.	Zhang Z, Wang Y, Dong Y, Xiang F, Zhang Y, Zhang H, Sun Y, Guo Z	Syst Appl Microbiol	10.1016/j.syapm.2022.126344	2022	*

References
#16808 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; Curators of the DSMZ; DSM 23365

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM (DOI 10.1099/ijsem.0.004332)

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol.37: 42-50 2014(DOI 10.1016/j.syapm.2013.11.002, PubMed 24321274)

#29360

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere2: 2017(DOI 10.1128/mSphere.00237-17, PubMed 28776041)- originally annotated from #25771 (see below)

#40415 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information).

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res.49: D498-D508 2020(DOI 10.1093/nar/gkaa1025, PubMed 33211880)

#67770 Japan Collection of Microorganism (JCM); Curators of the JCM;
#68371 Automatically annotated from API 50CH acid.

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta.

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information).

#69481 Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1. (DOI 10.21203/rs.3.rs-2527258/v1)

#76168

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers. (DOI 10.60712/SI-ID63892.1)

#122618 Collection of Institut Pasteur; Curators of the CIP; CIP 110209
#25771 IJSEM 187 2010(DOI 10.1099/ijs.0.011551-0, PubMed 19648343)
* These data were automatically processed and therefore are not curated

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Secundilactobacillus similis M36 | Type strain | DSM 23365, JCM 2765, LMG 23904, BCRC 80777, CIP 110209 (2024)

Schleiferilactobacillus similis DSM 23365 = JCM 2765 DSM 23365

Lactobacillus similis DSM 23365 = JCM 2765

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